John Innes Centre, Norwich Research Park,
Colney Lane, Norwich, NR4 7UH, UK.

Telephone: +44(0) 1603 450597 (direct)
+44(0) 1603 450000 (switchboard)
Fax: +44(0)1603 450595

Overview

Genome Explorer is a Java front end to many useful bioinformatics tools. It provides a single interface from which these tools can be accessed and automates a lot of 'behind-the-scenes' processes. It is provided as an executable jar file.

It provides additional functionality for searching sequence data (for particular groups of nucleotides or amino acids) and editing multiple sequence alignments.

GENOME EXPLORER

Genome Explorer was developed for Windows and requires Java 1.4.1 and biojava-1.21.

Link to Intallation instructions.

SOFTWARE DOWNLOADS
REQUIRED DOWNLOADS
  • To download Java 1.4.1 - go to the download page and select a Windows JRE.
  • To download ncbi-blast - go to the executables download page and select blastz.exe.
  • To download biojava-1.21 - go to the binaries download page and select biojava-1.21.jar, xcerces.jar, bytecode-0.91.jar, and jakarta-regexp.jar.
  • To download Treeview - go to the treeview hompage and select the Win32 version of treeview.
  • To download Clustalw1.81 - go to the clustalw download site and select clustalw1.81.DOS.zip.
  • To download phylip3.6a - go to the download page and select the windows executables (parts 1 and 2) and the documentation.
  • To download Treeview - go to the treeview hompage and select the Win32 version of treeview.

Designed and maintained by Virginia Barnard
LAST UPDATED: 30th June 2006